The Centre of Excellence EcolChange publications 2018
Aavik, T. & Helm, A. (2018). Restoration of plant species and genetic diversity depends on landscape-scale dispersal. Restoration Ecology, doi: 10.1111/rec.12634.
Anslan, S.; Bahram, M.; Tedersoo, L. (2018). Seasonal and annual variation in fungal communities associated with epigeic springtails (Collembola spp.) in boreal forests. Soil Biology & Biochemistry, 116, 245-252.10.1016/j.soilbio.2017.10.021.
Anslan, S.; Nilsson, R.H.; Wurzbacher, C.; Baldrian, P.; Tedersoo, L.; Bahram, M. (2018). Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. Mycokeys, 39, 29-40.10.3897/mycokeys.39.28109.
Bahram, M.; Hildebrand, F.; Forslund, S.K.; Anderson, J.L.; Soudzilovskaia, N.A.; Bodegom, P.M.; Bengtsson-Palme, J.; Anslan, S.; Coelho, L.P.; Harend, H.; Huerta-Cepas, J.; Tedersoo, L; Bork, P. (2018). Structure and function of the global topsoil microbiome. Nature, 560, 233-237.10.1038/s41586-018-0386-6.
Becker, H.; Aosaar, J.; Varik, M.; Morozov, G.; Aun, K.; Mander, Ü.; Soosaar, K.; Uri, V. (2018). Annual net nitrogen mineralization and litter flux in well-drained downy birch, Norway spruce and Scots pine forest ecosystems. Silva Fennica, 52 (4), 1?18.10.14214/sf.10013.
Bruelheide, H.; Dengler, J.; Purschke, O.; Lenoir, J.; Jimenez-Alfaro, B.; Hennekens, S.M.; Botta-Dukat, Z.; Chyntry, M.; Field, R.; Jansen, F.; Kattge, J.; Pillar, V.D.; Schrodt, F.; Mahecha, M.D.; Peet, R.K.; Sandel, B.; van Bodegom, P.; Altman, J.; Alvarez-Davila, E.; Arfin Khan, M.S.A.; Niinemets, Ü.;... Jandt, U. (2018). Global trait–environment relationships of plant communities. Nature Ecology & Evolution, 2, 1906−1917.10.1038/s41559-018-0699-8.
Bullock, J. M., Hooftman, D. A. P., Tamme, R., Götzenberger, L., Pärtel, M., Mallada González, L., & White, S. M. (2018). All dispersal functions are wrong, but many are useful: A response to Cousens et al. Journal of Ecology 106: 907–910.
Busch, Verena; Klaus, Valentin. H; Penone, Caterina; Schäfer, Deborah; Boch, Steffen; Prati, Daniel; Müller, Jörg; Socher, Stephanie A.; Niinemets, Ülo; Peñuelas, Josep; Hölzel, Norbert; Fischer, Markus; Kleinbecker, Till (2018). Nutrient stoichiometry and land use rather than species richness determine plant functional diversity. Ecology and Evolution, 8 (1), 601−616.10.1002/ece3.3609.
Busch, Verena; Klaus, Valentin. H; Penone, Caterina; Schäfer, Deborah; Boch, Steffen; Prati, Daniel; Müller, Jörg; Socher, Stephanie A.; Niinemets, Ülo; Peñuelas, Josep; Hölzel, Norbert; Fischer, Markus; Kleinbecker, Till (2018). Nutrient stoichiometry and land use rather than species richness determine plant functional diversity. Ecology and Evolution, 8 (1), 601−616.10.1002/ece3.3609.
Chatterjee P.; Kanagendran A.; Samaddar S.; Pazouki L.; Sa T.-M.; Niinemets Ü. (2018). Inoculation of Brevibacterium linens RS16 in Oryza sativa genotypes enhanced salinity resistance: Impacts on photosynthetic traits and foliar volatile emissions. Science of the Total Environment, 645, 721−732.10.1016/j.scitotenv.2018.07.187.
Chatterjee, Poulami; Samaddar, Sandipan; Niinemets, Ülo; Sa, Tong-Min (2018). Brevibacterium linens RS16 confers salt tolerance to Oryza sativa genotypes by regulating antioxidant defense and H+ ATPase activity. Microbiological Research, 215, 89−101, .10.1016/j.micres.2018.06.007.
Chiarucci, A., Pärtel, M., Pillar,V.D. & Chytrỳ, M. (2018) Long-term investigations and experimental manipulations: Useful perspectives for applied vegetation studies. Applied Vegetation Science 21: 1-2.
Davison, J., Moora, M., Öpik, M., Ainsaar, L., Ducousso, M., Hiiesalu, I., Jairus, T., Johnson, N., Jourand, P., Kalamees, R., Koorem, K., Meyer, J.Y., Püssa, K., Reier, Ü., Pärtel, M., Semchenko, M., Traveset, A., Vasar, M., Zobel, M. 2018. Microbial island biogeography: isolation shapes the life history characteristics but not diversity of root-symbiotic fungal communities. The ISME Journal, 12(9), 2211-2224. doi: 10.1038/s41396-018-0196-8
De Frenne, P; Blondeel, H; Brunet, J; Carón, M. M; Chabrerie, O; Cougnon, M; Cousins, S. A. O; Decocq, G; Diekmann, M; Graae, B. J; Hanley, M. E; Heinken, T; Hermy, M; Kolb, A; Lenoir, J; Liira, J; Orczewska, A; Shevtsova, A; Vanneste, T.; Verheyen, K. (2018). Atmospheric nitrogen deposition on petals enhances seed quality of the forest herb Anemone nemorosa. Plant Biology, 20 (3), 619-626.10.1111/plb.12688
De Smedt, P.; Baeten, L.; Proesmans, W. Berg, MP.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Deconchat, M.; Diekmann, M.; Gallet-Moron, E.; Giffard, B.; Liira, J.; Martin, L.; Ooms, A.; Valdés, A.; Wulf, M.; Hermy, M.; Bonte, D.; Verheyen, K. (2018). Linking macrodetritivore distribution to desiccation resistance in small forest fragments embedded in agricultural landscapes in Europe. Landscape Ecology, 33 (3), 407?421.10.1007/s10980-017-0607-7.
de Souza, V. F.; Niinemets, Ü.; Rasulov, B.; Vickers, C.,E.; Duvoisin Júnior, S.; Araújo, W. L.; de Carvalho Gonçalves, J. F. (2018). Alternative carbon sources for isoprene emission. Trends in Plant Science, 23 (12), 1081−1101.10.1016/j.tplants.2018.09.012.
Dengler, J., Wagner, V., Dembicz, I., Garcia-Mijangos, I., Naqinezhad, A., Boch, S., et al., Pärtel, M., et al., Biurrun, I. (2018). GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia, 48(3), 331-347.
Djukic, I., Kepfer-Rojas, S., Kappel Schmidt, I., Steenberg Larsen, K, Beier, C., Berg, B., Verheyen, K., Kriiska, K., Ostonen, I., et al. (2018). Early stage litter decomposition across biomes. Science of Total Environment, 628-629, 1369-1394.10.1016/j.scitotenv.2018.01.012.
Ehrmann, Steffen, Ruyts, Sanne C., Scherer-Lorenzen, Michael, Bauhus, Jürgen, Brunet, Jörg, Cousins, Sara A. O., Deconchat, Marc, Decocq, Guillaume, De Frenne, Pieter, De Smedt, Pallieter, Diekmann, Martin, Gallet-Moron, Emilie, Gärtner, Stefanie, Hansen, Karin, Kolb, Annette, Lenoir, Jonathan, Lindgren, Jessica, Naaf, Tobias, Paal, TaaviPanning, Marcus, Prinz, Maren, Valdés, Alicia, Verheyen, Kris, Wulf, Monika, Liira, Jaan (2018). Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments. Parasites & Vectors, 11, 23.10.1186/s13071-017-2590-x.
Espenberg, Mikk; Truu, Marika; Mander, Ülo; Kasak, Kuno; Nõlvak, Hiie; Ligi, Teele; Oopkaup, Kristjan; Maddison, Martin; Truu, Jaak (2018). Differences in microbial community structure and nitrogen cycling in natural and drained tropical peatland soils. Scientific Reports, 8, ARTN 4742.10.1038/s41598-018-23032-y.
Ezhova, Ekaterina; Ylivinkka, Ilona; Kuusk, Joel; Komsaare, Kaupo; Vana, Marko, Krasnova, Alisa; Noe, Steffen; Arshinov, Mikhail; Belan, Boris; Park, Sung-Bin; Lavric, Jost Valentin; Heimann, Martin; Petäjä, Tuukka; Vesala, Timo; Mammarella, Ivan; Kolari, Pasi; Bäck, Jaana; Rannik, Üllar; Kerminen, Veli-Matti; Kulmala, Markku (2018). Direct effect of aerosols on solar radiation and gross primary production in boreal and hemiboreal forests. Atmospheric Chemistry and Physics, 18, 17863−17881.10.5194/acp-18-17863-2018.
Faria, N., Peco, B. & Carmona, C.P. (2018) Effects of haying on vegetation communities, taxonomic diversity and sward properties in Mediterranean dry grasslands: a preliminary assessment. Agriculture, Ecosystems & Environment 251: 48-58.
Fernandez-Martinez, Marcos; Llusia, Joan; Filella, Iolanda; Niinemets, Ülo; Arneth, Almut; Wright, Ian J.; Loreto, Francesco; Penuelas, Josep (2018). Nutrient-rich plants emit a less intense blend of volatile isoprenoids. New Phytologist, 220 (3), 773−784.10.1111/nph.14889.
García de León, D., Neuenkamp, L., Moora, M., Öpik, M., Davison, J., Peña-Venegas, C., . . . Zobel, M. (2018). Arbuscular mycorrhizal fungal communities in tropical rain forest are resilient to slash-and-burn agriculture. Journal of Tropical Ecology, 34(3), 186-199. doi:10.1017/S0266467418000184
García de León, D.; Cantero, J. J.; Moora, M.; Öpik, M.; Davison, J.; Vasar, M.; Jairus, T. & Zobel, M. 2018. Soybean cultivation supports a diverse arbuscular mycorrhizal fungal community in central Argentina. Applied Soil Ecology https://doi.org/10.1016/j.apsoil.2017.11.020.
García de León, D., Davison, J., Moora, M., Öpik, M., Feng, H., Hiiesalu, I., Jairus, T., Koorem, K., Liu, Y., Phosri, C., Sepp, S. K., Vasar, M. & Zobel, M. 2018. Anthropogenic disturbance equalizes diversity levels in arbuscular mycorrhizal fungal communities. Global Change Biology 24:2649–2659.
Gerz, M.; Bueno, C. G.; Ozinga, W. A.; Zobel, M. & Moora, M. 2018. Niche differentiation and expansion of plant species are associated with mycorrhizal symbiosis. Journal of Ecology 106: 254-264.
Hautier, Y., Isbell, F., Borer, E.T., Seabloom, E.W., Harpole, W.S., Lind, E.M., MacDougall, A.S., Stevens, C.J., Adler, P.B., Alberti, J., Bakker, J.D., Brudvig, L.A., Buckley, Y.M., Cadotte, M., Caldeira, M.C., Chaneton, E.J., Chu, C., Daleo, P., Dickman, C.R., Dwyer, J.M., Eskelinen, A., Fay, P.A., Firn, J., Hagenah, N., Hillebrand, H., Iribarne, O., Kirkman, K.P., Knops, J.M.H., La Pierre, K.J., McCulley, R.L., Morgan, J.W., Pärtel, M., Pascual, J., Price, J.N., Prober, S.M., Risch, A.C., Sankaran, M., Schuetz, M., Standish, R.J., Virtanen, R., Wardle, G.M., Yahdjian, L., & Hector, A. (2018) Local loss and spatial homogenization of plant diversity reduce ecosystem multifunctionality. Nature Ecology and Evolution 2: 50–56.
Hari, Pertti; Noe, Steffen; Dengel, Sigrid; Elbers, Jan; Gielen, Bert; Kerminen, Veli-Matti; Kruijt, Bart; Kulmala, Liisa, Lindroth, Anders; Mammarella, Ivan; Petäjä, Tuukka; Schurges, Guy; Vanhatalo, Anni; Kulmala, Markku; Bäck, Jaana (2018). Prediction of photosynthesis in Scots pine ecosystems across Europe by a needle-level theory. Atmospheric Chemistry and Physics, 18, 13321−13328.10.5194/acp-18-13321-2018.soilbio.2018.10.018.
Hawksworth, D.L.; Suija, A.; Pérez-Ortega, S. (2018). (2652) Proposal to conserve the name Lecidea parmeliarum (Abrothallus parmeliarum) against Endocarpon parasiticus (Ascomycota: Dothideomycetes: Abrothallales). Taxon, 67 (6), 1212?1212.10.12705/676.21.
Jalakas, Pirko; Tulva, Ingmar; Kangor, Tiia; Sooväli, Pille; Rasulov, Bakhtier; Tamm, Ülle; Koppel, Mati; Kollist, Hannes; Merilo, Ebe; (2018). Gas exchange-yield relationships of malting barley genotypes treated with fungicides and biostimulants. European Journal of Agronomy, 99, 129−137.10.1016/j.eja.2018.07.001.
Jiang, S.; Liu, Y.; Luo, Ji.; Qin, M.; Johnson, N. C.; Öpik, M.; Vasar, M.; Chai, Y.; Zhou, X.; Mao, L.; Du, G.; An, L. & Feng, H. 2018. Dynamics of arbuscular mycorrhizal fungal community structure and functioning along a nitrogen enrichment gradient in an alpine meadow ecosystem. New Phytologist doi: 10.1111/nph.15112.
Jiang, Yifan; Veromann-Jürgenson, Linda-Liisa; Ye, Jiayan; Niinemets, Ülo (2018). Oak gall wasp infections of Quercus robur leaves lead to profound modifications in foliage photosynthetic and volatile emission characteristics. Plant, Cell & Environment, 41 (1), 160−175.10.1111/pce.13050.
Jiang, Yonglei; Lei, Yanbao; Yang, Yan; Korpelainen, Helena; Niinemets, Ülo; Li, Chunyang (2018). Divergent assemblage patterns and driving forces for bacterial and fungal communities along a glacier forefield chronosequence. Soil Biology & Biochemistry, 118, 207−216, .10.1016/j.soilbio.2017.12.019.
Jõks, M. & Pärtel, M. (2018) Plant diversity in Oceanic archipelagos: realistic patterns emulated by an agent-based computer simulation. Ecography
Kanagendran, Arooran; Pazouki, Leila; Bichele, Rudolf; Külheim, Carsten; Niinemets, Ülo (2018). Temporal regulation of terpene synthase gene expression in Eucalyptus globulus leaves upon ozone and wounding stresses: relationships with stomatal ozone uptake and emission responses. Environmental and Experimental Botany, 155, 552−565.10.1016/j.envexpbot.2018.08.002.
Kanagendran, Arooran; Pazouki, Leila; Li, Shuai; Liu, Bin; Kännaste, Astrid; Niinemets, Ülo (2018). Ozone-triggered surface uptake and stress volatile emissions in Nicotiana tabacum ‘Wisconsin’. Journal of Experimental Botany, 69 (3), 681−697.10.1093/jxb/erx431.
Kanagendran, Arooran; Pazouki, Leila; Niinemets, Ülo (2018). Differential regulation of volatile emission from Eucalyptus globulus leaves upon single and combined ozone and wounding treatments through recovery and relationships with ozone uptake. Environmental and Experimental Botany, 145, 21−38.10.1016/j.envexpbot.2017.10.012.
Kasak, Kuno; Kill, Keit; Pärn, Jaan; Mander, Ülo; (2018). Efficiency of a newly established in-stream constructed wetland treating diffuse agricultural pollution. Ecological Engineering, 119, 1-7.10.1016/j.ecoleng.2018.05.015.
Kasak, Kuno; Truu, Jaak; Ostonen, Ivika; Sarjas, Jürgen; Oopkaup, K., Paiste, Päärn; Kõiv-Vainik, Margit; Mander, Ülo; Truu, Marika (2018). Biochar enhances plant growth and nutrient removal in horizontal subsurface flow treatment wetland. Science of the Total Environment, 639, 67-74.10.1016/j.scitotenv.2018.05.146.
Khodosovtsev, A.; Darmostuk, V.; Suija, A.; Ordynets, A. (2018). Didymocyrtis trassii sp. nov. and other lichenicolous fungi on Cetraria aculeata. The Lichenologist, 50 (5), 529?540.10.1017/S0024282918000294.
Kiiker, Riinu; Hansen, Merili; Williams, Ingrid; Cooke, David; Runno-Paurson, Eve (2018). Outcome of sexual reproduction in the Phytophthora infestans population in Estonian potato fields. European Journal of Plant Pathology, 395−407.10.1007/s10658-018-1483-y.
Koorem, K.; Kostenko, O.; Snoek, L. B.; Weser, C.; Ramirez, K. S.; Wilschut, R. A. & van der Putten, W. H. 2018. Relatedness with plant species in native community influences ecological consequences of range expansions. Oikos doi: 10.1111/oik.04817.
Kuczynski, L., Côte, J., Toussaint, A., Brosse, S., Buisson, L. & Grenouillet, G. (2018) Spatial mismatch in morphological, ecological and phylogenetic diversity, in historical and contemporary European freshwater fish faunas. Ecography, doi:10.1111/ecog.03611.
Kuusk, Vivian; Niinemets, Ülo; Valladares, Femando (2018). A major trade-off between structural and photosynthetic investments operative across plant and needle ages in three Mediterranean pines. Tree Physiology, 38, 543−557.10.1093/treephys/tpx139.
Kännaste, Astrid; Laanisto, Lauri; Pazouki, Leila; Copolovici, Lucian; Suhorutšenko, Marina; Azeem, Muhammad; Toom, Lauri; Borg-Karlson, Anna-Karin; Niinemets, Ülo (2018). Diterpenoid fingerprints in pine foliage across an environmental and chemotypic matrix: Isoabienol content is a key trait differentiating chemotypes. Phytochemistry, 147, 80−88, .10.1016/j.phytochem.2017.12.007.
Kütt, Laura; Paal, Taavi; Lõhmus, Kertu; Rammi, Ilmar-Jürgen; Zobel, Kristjan; Liira; Jaan (2018). Multi-user quality of floral services along a gradient of margin habitats between semi-natural grasslands and forests. Applied Vegetation Science, 21 (3), 363-372.10.1111/avsc.12376.
Lekberg, Y.; Vasar, M.; Bullington, L.S.; Sepp, S.-K.; Antunes, P.M.; Bunn, R.; Larkin, B.G. & Öpik, M. 2018. More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers? New Phytologist doi: 10.1111/nph.15035.
Li, Shuai; Tosens, Tiina; Harley, Peter C.; Jiang, Yifan; Kanagendran, Arooran; Grosberg, Mirjam; Jaamets, Kristen; Niinemets, Ülo (2018). Glandular trichomes as a barrier against atmospheric oxidative stress: Relationships with ozone uptake, leaf damage, and emission of LOX products across a diverse set of species. Plant, Cell & Environment, 41 (5), 1263-2177, .10.1111/pce.13128
Li, Y., Shipley, B., Price, J. N., Dantas, V. de L., Tamme, R., Westoby, M., Siefert, A., Schamp, B. S., Spasojevic, M. J., Jung, V., Laughlin, D. C., Richardson, S. J., Le Bagousse-Pinguet, Y., Schöb, C., Gazol, A., Prentice, H. C., Gross, N., Overton, J., Cianciaruso, M. V., Louault, F., Kamiyama, C., Nakashizuka, T., Hikosaka, K., Sasaki, T., Katabuchi, M., Frenette Dussault, C., Gaucherand, S., Chen, N., Vandewalle, M., & Batalha, M. A. (2018) Habitat filtering determines the functional niche occupancy of plant communities worldwide. Journal of Ecology 106: 1001–1009.
Li, X.; Xiao, J.; He, B.; Arain, M.; Beringer, J.; Desai, A. R.; Emmel, C.; Hollinger, D. Y.; Krasnova, A.; Mammarella, I.; Noe, S. M.; Serrano Ortiz, P.; Rey-Sanchez, C.; Rocha, A. V.; Varlagin, A. (2018). Solar-induced chlorophyll fluorescence is strongly correlated with terrestrial photosynthesis for a wide variety of biomes: First global analysis based on OCO-2 and flux tower observations. Global Change Biology, 1−59.10.1111/gcb.14297.
Liu, Bin; Kaurilind, Eve; Jiang, Yifan; Niinemets Ülo. (2018). Methyl salicylate differently affects benzenoid and terpenoid volatile emissions in Betula pendula. Tree Physiology, 38, 1513-1525, .10.1093/treephys/tpy050
Loiola, P., Bello, F., Chytrý, M., Götzenberger, L., Carmona, C. P., Pyðek, P. & Lososová, Z. (2018) Invaders among locals: alien species decrease phylogenetic and functional diversity while increasing dissimilarity among native community members. Journal of Ecology, doi:10.1111/1365-2745.12986
Loit K, Soonvald L, Kukk M, Astover A, Runno-Paurson E, Kaart T, Öpik M. 2018. The indigenous arbuscular mycorrhizal fungal colonisation potential in potato roots is affected by agricultural treatments. Agronomy Research 16, 510-522, 10.15159/ar.18.063
Mander, Ülo; Kull, Ain; Uuemaa, Evelyn; Mõisja, Kiira; Külvik, Mart; Kikas, Tambet; Raet, Janar; Tournebize, Julien; Sepp, Kalev (2018). Green and brown infrastructures support a landscape-level implementation of ecological engineering. Ecological Engineering, 120, 23-35.10.1016/j.ecoleng.2018.05.019.
Martello, F., de Bello, F., Morini, M.S. de C., Silva, R.R., Souza-Campana, D.R. de, Ribeiro, M.C. & Carmona, C.P. (2018) Homogenization and impoverishment of taxonomic and functional diversity of ants in Eucalyptus plantations. Scientific Reports 8: 3266.
Martin FM, Harrison MJ, Lennon S, Lindahl B, Öpik M, Polle A, Requena N, Selosse M-A. 2018. Cross-scale integration of mycorrhizal function. New Phytologist 220: 941–946.
Menzel, Andreas; Hempel, Stefan; Davison, John; Moora, Mari; Pyðek Petr; Rillig, Matthias C; Zobel, Martin; Kühn, Ingolf (2018). Widely distributed native and alien plant species differ in arbuscular mycorrhizal associations and related functional trait interactions. Ecography, 41 (9), 1583?1593.10.1111/ecog.03367.
Merilo, Ebe; Yarmolinsky, Dmitry; Jalakas, Pirko; Parik, Helen; Tulva, Ingmar; Rasulov, Bakhtier; Kilk, Kalle; Kollist, Hannes (2018). Stomatal VPD response: there is more to the story than ABA. Plant Physiology, 176 (1), 851−864.10.1104/pp.17.00912
Mirmajlessi, S. M.; Bahram, M.; Mänd, M.; Najdabbasi, N; Mansouripour, S. M.; Loit, E. (2018). Survey of soil fungal communities in strawberry fields by Illumina Amplicon sequencing. Eurasian Soil Science, 51 (6), 682-691
Mitsch, William; Mander, Ülo (2018). Wetlands and carbon revisited. Ecological Engineering, 114, 1-6.10.1016/j.ecoleng.2017.12.027.
Moreno-Martínez Á.; Camps-Valls G.; Kattge J.; Robinson N.; Reichstein M.; van Bodegom P.; Kramer K.; Cornelissen J.H.C.; Reich P.; Bahn M.; Niinemets Ü.; Peñuelas J.; Craine J.M.; Cerabolini B.E.L.; Minden V.; Laughlin D.C.; Sack L.; Allred B.; Baraloto C.; Byun C. ... Running S.W. (2018). A methodology to derive global maps of leaf traits using remote sensing and climate data. Remote Sensing of Environment, 218, 69−88.10.1016/j.rse.2018.09.006.
Neuenkamp, L.; Moora, M.; Öpik, M.; Davison, J.; Gerz, M.; Männistö, M.; Jairus, T.; Vasar, M. & Zobel, M. 2018. The role of plant mycorrhizal type and status in modulating the relationship between plant and arbuscular mycorrhizal fungal communities. New Phytologist doi: 10.1111/nph.14995.
Niinemets, Ü. (2018). When leaves go over the thermal edge. Plant, Cell & Environment, 41 (6), 1247−1250.10.1111/pce.13184.
Niinemets, Ülo (2018). Storage of defense metabolites in the leaves of Myrtaceae: news of the eggs in different baskets. Tree Physiology, 38 (10), 1445−1450.10.1093/treephys/tpy115.
Niinemets, Ülo (2018). What Are Plant-Released Biogenic Volatiles and How They Participate in Landscape- to Global-Level Processes? In: Perera, A.; Peterson, U.; Pastur, G.; Iverson, L. (Ed.). Ecosystem Services from Forest Landscapes (29−56). Berlin: Springer International Publishing AG.10.1007/978-3-319-74515-2_3.
Niinemets, Ülo; Bravo, León A.; Copolovici, Lucian (2018). Changes in photosynthetic rate and stress volatile emissions through desiccation‐rehydration cycles in desiccation‐tolerant epiphytic filmy ferns (Hymenophyllaceae). Plant, Cell & Environment, 41, 1605-1617.10.1111/pce.13201
Nilsson, R. Henrik; Taylor, Andy F. S.; Adams, Rachel I.; Baschien, Christiane; Bengtsson-Palme, Johan; Cangren, Patrik; Coleine, Claudia; Daniel, Heide-Marie; Glassman, Sydney I.; Hirooka, Yuuri; Irinyi, Laszlo; Irsenaite, Reda; Martin-Sanchez, Pedro M.; Meyer, Wieland; Oh, Seung-Yoon; Sampaio, Jose Paulo; Seifert, Keith A.; Sklenar, Frantisek; Stubbe, Dirk; Suh, Sung-Oui ... Kõljalg, Urmas; Abarenkov, Kessy (2018). Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). Mycokeys, 28, 65?82.10.3897/mycokeys.28.20887.
Nõlvak, Hiie; Truu, Marika; Oopkaup, Kristjan;Kanger, Kärt; Krustok, Ivo; Nehrenheim, Emma; Truu, Jaak (2018). Reduction of antibiotic resistome and integron-integrase genes in laboratory-scale photobioreactors treating municipal wastewater. Water Research, 142, 363-372.10.1016/j.watres.2018.06.014.
Otsing, E.; Barantal, S.; Anslan, S.; Koricheva, J.; Tedersoo, L. (2018). Litter species richness and composition effects on fungal richness and community structure in decomposing foliar and root litter. Soil Biology & Biochemistry, 125, 328-339.10.1016/j.soilbio.2018.08.006.
Pent, Mari; Hiltunen, Markus; Põldmaa, Kadri; Furneaux, Brendan; Hildebrand, Falk; Johannesson, Hanna; Ryberg, Martin; Bahram, Mohammad. (2018). Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies. Environmental Microbiology, 20, 1641?1650.10.1111/1462-2920.14069 .
Pillar,V.D., Chiarucci, A., Pärtel, M., & Chytrý, M. (2018) Linking biodiversity to ecosystems: A task for plant community ecologists. Journal of Vegetation Science 29: 1-3.
Plue, J., Aavik, T. & Cousins, S.A.O. (2018) Grazing networks promote plant functional connectivity among isolated grassland communities. Diversity and Distributions, doi: 10.1111/ddi.12842.
Portillo-Estrada, M.; Niinemets, Ü. (2018). Massive release of volatile organic compounds due to leaf midrib wounding in Populus tremula. Plant Ecology, 219, 1021−1028.10.1007/s11258-018-0854-y.
Puy, J.; Dvoráková, H.; Carmona, C. P.; de Bello, F.; Hiiesalu, I. & Latzel V. 2018. Improved demethylation in ecological epigenetic experiments: Testing a simple and harmless foliar demethylation application. Methods in Ecology and Evolution doi: 10.1111/2041-210X.12903.
Põlme, S.; Bahram, M.; Jacquemyn, H.; Kennedy, P.; Kohout, P.; Moora, M.; Oja, J.; Öpik, M.; Pecoraro, L. & Tedersoo, L. 2018. Host preference and network properties in biotrophic plant-fungal associations. New Phytologist doi: 217: 1230-1239
Pärn, Jaan; Henine, Hocine; Kasak, Kuno; Kauer, Karin; Sohar, Kristina; Tournebize, Julien; Uuemaa, Evelyn; Välik, Kristiina; Mander, Ülo; (2018). Nitrogen and phosphorus discharge from small agricultural catchments predicted from land use and hydroclimate. Land Use Policy, 75, 260-268.10.1016/j.landusepol.2018.03.048.
Pärn, Jaan; Verhoeven, Jos T. A.; Butterbach-Bahl, Klaus; Dise, Nancy B.; Ullah, Sami; Aasa, Anto; Egorov, Sergey; Espenberg, Mikk; Järveoja, Järvi; Jauhiainen, Jyrki; Kasak, Kuno; Klemedtsson, Leif; Kull, Ain; Laggoun-Défarge, Fatima; Lapshina, Elena D.; Lohila, Annalea; Lõhmus, Krista; Maddison, Martin; Mitsch, William J.; Müller, Christoph; Niinemets Ülo; ... Mander, Ülo (2018). Nitrogen-rich organic soils under warm well-drained conditions are global nitrous oxide emission hotspots. Nature Communications, 9, Article number: 1135.10.1038/s41467-018-03540-1.
Ramirez, K. S.; Knight, C.G.; de Hollander, M.; Brearley, F. Q.; Constantinides, B.; Cotton, A.; Creer, S.; Crowther, T. W.; Davison, J.; Delgado-Baquerizo, M.; Dorrepaal, E.; Elliott, D. R.; Fox, G.; Griffiths, R.I.; Hale, C.; Hartman, K.; Houlden, A.; Jones, D. L.; Krab, E. J.; Maestre, F. T.; McGuire, K. L.; Monteux, S.; Orr, C. H.; van der Putten, W. H.; Roberts, I. S.; Robinson, D. A.; Rocca, J. D.; Rowntree, J.; Schlaeppi, K.; Shepherd, M.; Singh, B. K.; Straathof, A. L.; Bhatnagar, J. M.; Thion, C.; van der Heijden, M. G. A. & de Vries F. T. 2018. Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology 3: 189-196.
Rasulov, Bahtijor; Talts, Eero; Bichele, Irina; Niinemets, Ülo (2018). Evidence that isoprene emission is not limited by cytosolic metabolites. Exogenous malate does not invert the reverse sensitivity of isoprene emission to high [CO2]. Plant Physiology, 176 (2), 1573−1586, .10.1104/pp.17.01463.
Riit, T.; Tedersoo, L.; Drenkhan, R.; Runno-Paurson, E.; Kokko, H.; Anslan, S. (2018). Corrigendum for: “Oomycete-specific ITS primers for identification and metabarcoding”. MycoKeys, 41, 119-120.10.3897/mycokeys.14.9244.
Saitta, A.; Anslan, S.; Bahram, M.; Brocca, L.; Tedersoo, L. (2018). Tree species identity and diversity drive fungal richness and community composition along an elevational gradient in a Mediterranean ecosystem. Mycorrhiza, 28, 39-47.10.1007/s00572-017-0806-8.
Sepp, S.-K.; Jairus, T.; Vasar, M.; Zobel, M. & Öpik, M. 2018. Effects of land use on arbuscular mycorrhizal fungal communities in Estonia. Mycorrhiza, 28, 259-268 doi: https://doi.org/10.1007/s00572-018-0822-3.
Spirin, V.; Malysheva, V.; Trichies, G.; Savchenko, A.; Põldmaa, K.; Nordén, J.; Miettinen, O.; Larsson, K.-H. (2018). A preliminary overview of the corticioid Atractiellomycetes (Pucciniomycotina, Basidiomycetes) . Fungal Systematics and Evolution, 2, 311?340.10.3114/fuse.2018.02.09.
Stepanchikova, I.S.; Himelbrant, D.E.; Motiejûnaitë, J.; Ahti, T.; Suija, A.; Kuznetsova, E.S.; Dyomina, A.V. (2018). New records of lichens and allied fungi from the Leningrad Region, Russia. IX. Folia Cryptogamica Estonica, 55, 117?124.10.12697/fce.2018.55.12 .
Suija, A.; Hawksworth, D.L.; Pérez-Ortega, S. (2018). The generic name Abrothallus (Abrothallales, Dothideomycetes), and names proposed in the genus by Giuseppe De Notaris, S¸ren Christian Sommerfelt, and Ignaz Kotte. Taxon, 67 (6), 1169?1179.10.12705/676.13.
Suija, Ave; Kaasalainen, Ulla; Kirika, Paul Mugai; Rikkinen, Jouko (2018). Taitaia, a novel lichenicolous fungus in tropical montane forests in Kenya (East-Africa). The Lichenologist, 50 (2), 173?184.10.1017/S0024282918000026.
Zamora, Juan Carlos; Svensson, Mans; Kirschner, Roland; Olariaga, Ibai; Ryman, Svengunnar; Alberto Parra, Luis; Geml, Jozsef; Rosling, Anna; Adamcik, Slavomir; Ahti, Teuvo; Aime, M. Catherine; Ainsworth, A. Martyn; Albert, Laszlo; Alberto, Edgardo; Garcia, Alberto Altes; Ageev, Dmitry; Agerer, Reinhard; Aguirre-Hudson, Begona; Ammirati, Joe; Andersson, Harry ... Kõljalg, Urmas; Ekmani, Stefan (2018). Considerations and consequences of allowing DNA sequence data as types of fungal taxa. Ima Fungus, 9 (1), 167?175.10.5598/imafungus.2018.09.01.10.
Zhang, Tao; Niinemets, Ülo; Sheffield, Justin; Lichtein, Jeremy W. (2018). Shifts in tree functional composition amplify the response of forest biomass to climate. Nature, 556, 99−102.10.1038/nature26152.
Zobel, M.; Davison, J.; Edwards, M. E.; Brochmann, C.; Coissac, E.; Taberlet, P.; Willerslev, E. & Moora, M. 2018. Ancient environmental DNA reveals shifts in dominant mutualisms during the late Quaternary. Nature Communications 9:139.
Takkis, Krista; Kull, Tiiu; Hallikma, Tiit; Jaksi, Piia; Kaljund, Karin; Kauer, Karin; Kull, Thea; Kurina, Olavi; Külvik, Mart; Lanno, Kaire; Leht, Malle; Liira, Jaan; Melts, Indrek; Pehlak, Hannes; Raet, Janar; Sammet, Kaarel; Sepp, Kalev; Väli, Ülo; Laanisto, Lauri (2018). Drivers of species richness and community integrity of small forest patches in an agricultural landscape. Journal of Vegetation Science, 29, 978-988
Tedersoo, L., Laanisto, L., Rahimlou, S., Toussaint, A., Hallikma, T. & Pärtel, M. (2018) Global database of plants with root-symbiotic nitrogen fixation: NodDB. Journal of Vegetation Science, 560-567
Tedersoo, L.; Kõljalg, U.; Bahram, M.; Döring, M.; Schigel, D.; May, T.; Sanchez-Ramirez, S.; Ryberg, M.; Abarenkov, K. (2018). High-level classification of the Fungi and a tool for evolutionary ecological analyses. Fungal Diversity, 90, 135?159.10.1007/s13225-018-0401-0.
Tedersoo, L.; Tooming-Klunderud, A.; Anslan, S. (2018). PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytologist, 217 (3), 1370-1385.10.1111/nph.14776.
Treseder, K.K.; Allen, E.B.; Egerton-Warburton, L.M.; Hart, M.M.; Klironomos, J.N.; Maherali, H.; Tedersoo, L. (2018). Arbuscular mycorrhizal fungi as mediators of ecosystem responses to nitrogen deposition: A trait-based predictive framework. Journal of Ecology, 106, 480-489.10.1111/1365-2745.12919.
Tipayno, Sherlyn C.; Truu, Jaak; Samaddar, Sandipan; Truu, Marika; Preem, Jens-Konrad; Oopkaup, Kristjan; Espenberg, Mikk; Chatterjee, Poulami; Kang, Yeongyeong; Kim, Kiyoon; Sa, Tongmin (2018). The bacterial community structure and functional profile in the heavy metal contaminated paddy soils, surrounding a nonferrous smelter in South Korea. Ecology and Evolution, 8 (12), 6157?6168.10.1002/ece3.4170.
Träger, S, Öpik, M, Vasar, M, Wilson, SD (2018). Belowground plant parts are crucial for comprehensively estimating total plant richness in herbaceous and woody habitats, Ecology, doi: 10.1002/ecy.2575
Török, P.; Helm, A.; Kiehl, K.; Buisson, E.; Valkó, O (2018). Beyond the species pool: modification of species dispersal, establishment, and assembly by habitat restoration. Restoration Ecology, 26, S65?S72.10.1111/rec.12825.
Waller, L. P.; Felten, J.; Hiiesalu, I. & Vogt-Schilb, H. 2018. Sharing resources for mutual benefit: crosstalk between disciplines deepens the understanding of mycorrhizal symbioses across scales. New Phytologist 217: 29–32.
Wang, G. Z.; Ma, C. J. and S. S. Zhou, S. S.; Põldmaa, K.; Tamm, H.; Luo, Y.; Guo, M. P.; Ma, X. L.; Bian, Y. B.; Zhou, Y. (2018). First Report of cobweb disease of Auricularia polytricha (Mont.) Sacc. caused by Cladobotryum cubitense in Xuzhou, China. Plant Disease, 102 (7), 1452.PDIS-11-17-1827-PDN.
Van Geel, M., Jacquemyn, H., Plue, J., Saar, L., Kasari, L., Peeters, G., van Acker, K., Honnay, O. & Ceulemans, T. (2018). Abiotic rather than biotic filtering shapes the arbuscular mycorrhizal fungal communities of European seminatural grasslands. New Phytologist, doi:10.1111/nph.14947.
Veber, Gert; Kull, Ain; Villa, Jorge a.; Maddison, Martin; Paal, Jaanus; Oja, Tõnu; Iturraspe, Rodolfo; Pärn, Jaan; Teemusk, Alar;Mander, Ülo (2018). Greenhouse gas emissions in natural and managed peatlands of America: Case studies along a latitudinal gradient. Ecological Engineering, 114, 34-45.10.1016/j.ecoleng.2017.06.068.